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Table 1 Nucleotide sequence of primer sets used for RT-PCR analysis in this study

From: Assessment of viral RNA in idiopathic pulmonary fibrosis using RNA-seq

Genes

Forward nucleotide sequence (5′ → 3′)

Revers nucleotide sequence (5′ → 3′)

EBV EBERs

GACTCTGCTTTCTGCCGTCT

AATAGCGGACAAGCCGAATA

HERV-K

RT-env-1-Rev

 

CACCGCACTATTGGCCACA

Nested-PCR env(1)

AGGGAAAAACCGCCTTAGGG

CACCGCACTATTGGCCACA

Nested-PCR env [31]

TGCGGGCAGCAATACTGCT

CGCACTATTGGCCACACATTC

Quantitative PCR env

TCACATGGTAAGCGGGATGTC

CGCACTATTGGCCACACATTC

Quantitative PCR LTR

AGGGAAAAACCGCCTTAGGG

AGCAGACAAACATGTGAACAAAGG

LTR-Fwd |-Rev

CGTGGGAAGGGAAAGACCTGA

AGCAGACAAACATGTGAACAAAGG

GAPDH

GAPDH

AGATCATCAGCAATGCCTCCT

AGTCTTCTGGGTGGCAGTG

HCV

p3804|p305

GTATCTCGAGGCGACACTCCACCATAGAT

ATACTCGAGGTGCACGGTCTACGAGACCT

p302|p304

CCACCATAGATCTCTCCCCTGT

CACTCTCGAGCACCCTATCAGGCAGT

Saimiri virus

Human cyclin D1

CGGAGGAGAACAAACAGATCATCCGCAAAC

GTGTGAGGCGGTAGTAGGACAGGAAGTTGT

Viral cyclin D1

ACTGCTTACCTGGATGCATCTGCTCTGTGA

GCAAGTACAGCTTCAGTGTGTCCCATTTCAGTGC

HHV-7

G1|G2

CATGCACAACGCAAGCTCTACTA

ACGTAGTTTCGTGCAGTTGTATCGT

G3|G4

GCTTGTTAGAATACACAAGATGTACA

CTGTCTAATAATGTCTATGTCTCTCCA