From: Assessment of viral RNA in idiopathic pulmonary fibrosis using RNA-seq
Virus name | Control | IPF | ||||||
---|---|---|---|---|---|---|---|---|
# of samples | % of samples | Min | Max | # of samples | % of samples | Min | Max | |
1st group | ||||||||
 Human | 4 | 100% | 26,511,620 | 39,945,034 | 11 | 100% | 23,500,148 | 44,071,337 |
 Cytomegalovirus | 0 | 0% | 0 | 0 | 1 | 9% | 0.80 | 0.80 |
 Adenovirus C | 0 | 0% | 0 | 0 | 2 | 18% | 0.03 | 0.07 |
 Mouse mammary tumor virus | 1 | 25% | 0.03 | 0.03 | 4 | 36% | 0.03 | 0.05 |
 Simbu virus | 3 | 75% | 0.03 | 0.23 | 5 | 45% | 0.03 | 0.20 |
 Immunodeficiency virus 1 | 0 | 0% | 0 | 0 | 1 | 9% | 0.03 | 0.03 |
 Hepatitis C virus genotype 1 | 0 | 0% | 0 | 0 | 1 | 9% | 0.03 | 0.03 |
 Hepatitis C virus genotype 2 | 0 | 0% | 0 | 0 | 1 | 9% | 0.04 | 0.04 |
 Papillomavirus 110 | 0 | 0% | 0 | 0 | 1 | 9% | 0.02 | 0.02 |
 Shamonda virus | 4 | 100% | 5.407 | 15.489 | 11 | 100% | 0.03 | 15.98 |
2nd group | ||||||||
 Human | 10 | 100% | 19,847,360 | 37,420,687 | 10 | 100% | 21,826,038 | 41,977,536 |
 Cytomegalovirus | 0 | 0% | 0.00 | 0.00 | 2 | 20% | 0.07 | 0.14 |
 Herpesvirus 6A | 0 | 0% | 0.00 | 0.00 | 1 | 10% | 0.04 | 0.04 |
 Herpesvirus 7 | 2 | 20% | 0.03 | 0.04 | 0 | 0% | 0 | 0 |
 Adenovirus C | 10 | 100% | 0.05 | 0.35 | 10 | 100% | 0.05 | 1.05 |
 Simian virus 40 | 1 | 10% | 0.03 | 0.03 | 0 | 0% | 0 | 0 |
 Papillomavirus 16 | 1 | 10% | 0.04 | 0.04 | 0 | 0% | 0 | 0 |
 Shamonda virus | 10 | 100% | 0.35 | 6.28 | 10 | 100% | 1.42 | 11.17 |
3rd group | ||||||||
 Tick-borne encephalitis virus | 2 | 40% | 0.00 | 0.11 | 2 | 33% | 0.00 | 0.06 |
 Hepatitis C virus genotype 1 | 5 | 100% | 0.03 | 3.63 | 6 | 100% | 0.14 | 1.07 |
 Hepatitis C virus genotype 6 | 3 | 60% | 0.00 | 0.04 | 2 | 33% | 0.00 | 0.03 |
 Hepatitis C virus genotype 2 | 4 | 80% | 0.00 | 0.11 | 5 | 83% | 0.00 | 0.09 |
 Adenovirus C | 5 | 100% | 0.02 | 0.33 | 6 | 100% | 0.78 | 3.27 |
 Adenovirus E | 0 | 0% | 0.00 | 0.00 | 1 | 17% | 0.00 | 0.03 |
 Herpesvirus 1 | 0 | 0% | 0.00 | 0.35 | 1 | 17% | 0.00 | 0.06 |
 Herpesvirus 2 | 1 | 20% | 0.00 | 0.04 | 5 | 83% | 0.00 | 0.03 |
 Epstein-Bar virus | 1 | 20% | 0.00 | 0.04 | 1 | 17% | 0.00 | 0.14 |
 Cytomegalovirus | 4 | 80% | 0.00 | 0.41 | 2 | 33% | 0.00 | 0.09 |
 Herpesvirus 7 | 3 | 60% | 0.00 | 0.07 | 0 | 0% | 0.00 | 0.00 |
 Kaposi’s sarcoma-associated herpesvirus | 1 | 20% | 0.00 | 0.02 | 1 | 17% | 0.00 | 0.02 |
 Cutthroat trout virus | 0 | 0% | 0.00 | 0.00 | 3 | 50% | 0.00 | 0.03 |
 Measles virus | 0 | 0% | 0.00 | 0.00 | 2 | 33% | 0.00 | 0.03 |
 Abelson murine leukemia virus | 5 | 100% | 0.01 | 0.31 | 1 | 17% | 0.00 | 0.03 |
 Shamonda virus | 3 | 60% | 0.00 | 0.05 | 1 | 17% | 0.00 | 0.03 |
 Simian virus 40 | 5 | 100% | 0.02 | 0.46 | 5 | 83% | 0.00 | 0.06 |
 Papillomavirus 28 | 0 | 0% | 0.00 | 0.00 | 1 | 17% | 0.00 | 0.03 |
 Papillomavirus 100 | 0 | 0% | 0.00 | 0.00 | 1 | 17% | 0.00 | 0.03 |