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Table 1 The primers oligonucleotide sequences used in this study

From: Identification and detection of pathogenic bacteria from patients with hospital-acquired pneumonia in southwestern Iran; evaluation of biofilm production and molecular typing of bacterial isolates

Target gene Primer sequence (5′ → 3′) Amplicon Length, bp References
nucA F-CTG GCA TAT GTA TGG CAA TTG TT
R-TAT TGA CCT GAA TCA GCG TTG TCT
670 [23]
aroE F-AAGGTGCGAATGTGACGGTG
R-AACTGGTTCTACGTCAGGCA
620 [24]
ure-D F-CCC GTT TTA CCC GGA AGA AG
R-GGA AAG AAG ATG GCA TCC TGC
243 [25]
OprL F-TTCCGGTGAAGGTGCCAAT
R-ACCGGACGCTCTTTACCATA
507 Unpublished data
gltA F-GACATCAACCACCGCGAAAT
R-GGACCCCAAAGAGCAGAGAT
332 Unpublished data
mecA F-GTG AAG ATA TAC CAA GTG ATT
R-ATG CGC TAT AGA TTG AAA GGA T
147 [23]
SCCmec I F-GCTTTAAAGAGTGTCGTTACAGG
R-GTTCTCTCATAGTATGACGTCC
613 [26]
SCCmec II F-CGTTGAAGATGATGAAGCG
R-CGAAATCAATGGTTAATGGACC
398 [26]
SCCmec III F-CCATATTGTGTACGATGCG
R-CCTTAGTTGTCGTAACAGATCG
280 [26]
SCCmec IVa F-GCCTTATTCGAAGAAACCG
R-CTACTCTTCTGAAAAGCGTCG
776 [26]
SCCmec IVb F-TCTGGAATTACTTCAGCTGC
R-AAACAATATTGCTCTCCCTC
493 [26]
SCCmec IVc F-ACAATATTTGTATTATCGGAGAGC
R-TTGGTATGAGGTATTGCTGG
200 [26]
SCCmec IVd F-CTCAAAATACGGACCCCAATACA
R-TGCTCCAGTAATTGCTAAAG
881 [26]
SCCmec V F-GAACATTGTTACTTAAATGAGCG
R-TGAAAGTTGTACCCTTGACACC
325 [26]
agr I R-GTCACAAGTACTATAAGCTGCGAT 440 [27]
agr II R-GTATTACTAATTGAAAAGTGCCATAGC 573 [27]
agr III R-CTGTTGAAAAAGTCAACTAAAAGCTC 406 [27]
agr IV R-CGATAATGCCGTAATAC CCG 588 [27]
pan-agr F-ATGCACATGGTGCACATGC   [27]