Table 2 Microorganisms detected by BALF mNGS
From: Diagnosis of lung squamous cell carcinoma based on metagenomic Next-Generation Sequencing
Genus | Species | |||||
|---|---|---|---|---|---|---|
Type | Name | Sequence reads | Relative abundance% | Name | Sequence reads | Relative abundance% |
G− | Prevotella | 4144 | 47.12 | Prevotella denticola | 2124 | 24.15 |
G+ | Streptococcus | 1316 | 14.96 | Streptococcus sanguinis | 443 | 5.04 |
G− | Veillonella | 985 | 11.20 | Veillonella parvula | 365 | 4.15 |
G+ | Rothia | 349 | 3.97 | Rothia mucilaginosa | 111 | 1.26 |
G+ | Actinomyces | 214 | 2.43 | Actinomyces oris | 50 | 0.57 |
G− | Haemophilus | 187 | 2.13 | Haemophilus parahaemolyticus | 134 | 1.52 |
G+ | Lactobacillus | 173 | 1.97 | Lactobacillus salivarius | 124 | 1.41 |
Fungus | Candida | 9 | 0.10 | Candida albicans | 9 | 0.10 |
Fungus | Nakaseomyces | 2 | 0.02 | [Candida] glabrata | 2 | 0.02 |