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Table 2 An overview of significant gene expression module pathways

From: The bronchial epithelial cell bacterial microbiome and host response in patients infected with human immunodeficiency virus

Gene Expression Module

Number of Genes

Pathway Identified

FDR

Tan

201

Lysosome, Immune Response, Plasma Membrane

<5.0 × 10-4

Red

554

Immune Response, Defense Response, Inflammatory Response, Response to Wounding

<1.0 × 10-12

Midnight Blue

82

Magnesium Ion Binding

<0.05

Green

791

Cilia

<2 × 10-4

Turquoise

6050

Intracellular Organelle, Membrane-Enclosed Lumen

<2 × 10-7

Dark Green

43

None Identified

N/A

Black

452

Cell to Cell Signaling, Cell Membrane

<1.0 × 10-5

Magenta

365

Oxidation/Reduction, Microsomes

<2.0 × 10-2

Pink

427

Immune Response, Immunoglobulion, Antigen Presentation

<1.0 × 10-3

Brown

1274

Glycoprotein, Plasma Membrane, Immune Response

<1.0 × 10-6

Blue

5675

Nucleus, Transcription Regulation, Nuclear Lumen

<2 × 10-4

Grey

5861

Olfactory Transduction

<4.9 × 10-42

Green Yellow

245

Immunoglobulin, Antigen Processing and Presentation

<1 × 10-4

Light Green

63

None Identified

N/A