Table 1 Homology analyses of differentially expressed LncRNAs
LncRNAs in Rattus norvegicus | Homologous sequences in Homo sapiens | ||||
|---|---|---|---|---|---|
(Transcript locus) | Transcript name | Length (bp) | E value | Identity | NCBI accession number |
ENSRNOT00000093380 (chr7:102650147–102744755) | OR6C74, mRNA | 9556 | 1.00E-15 | 87/105(83%) | NM_001005490.2 |
TCONS_00000515 (chr1:11908949–11967214) | PRRC2C, mRNA | 10381 | 1.00E-37 | 120/134(90%) | NM_015172.4 |
TCONS_00000521 (chr1:11911328–11967214) | PRRC2C, mRNA | 10381 | 1.00E-37 | 120/134(90%) | NM_015172.4 |
TCONS_00009865 (chr1:180882154–180949275) | SPNS1, mRNA | 1968 | 2.00E-56 | 170/193(88%) | NM_001142448.2 |
DDX55, lncRNA | 2728 | 1.00E-09 | 48/51(94%) | NR_135104.2 | |
PPIE, lncRNA | 4292 | 1.00E-09 | 48/51(94%) | NR_036544.2 | |
SNX19, lncRNA | 15776 | 3.00E-05 | 32/32(100%) | NR_144939.2 | |
KCTD7, mRNA | 4869 | 3.00E-05 | 32/32(100%) | NM_153033.5 | |
MIS12, mRNA | 2502 | 3.00E-05 | 32/32(100%) | NM_001258217.2 | |
SIDT1, lncRNA | 4392 | 3.00E-05 | 32/32(100%) | NR_136285.2 | |
ZNF776, lncRNA | 3187 | 3.00E-05 | 32/32(100%) | NR_145326.2 | |
MRPS25, lncRNA | 4237 | 3.00E-05 | 32/32(100%) | NR_135246.2 | |
CSNK2A1, mRNA | 12657 | 3.00E-05 | 32/32(100%) | NM_177560.3 | |
TCONS_00017508 (chr1:23732451–23778788) | PRRC2C, mRNA | 10381 | 0 | 1055/1235(85%) | NM_015172.4 |
CLVS2, mRNA | 11219 | 4.00E-157 | 365/395(92%) | NM_001010852.4 | |
TCONS_00030049 (chr1:227157176–227297522) | RIC1, mRNA | 6786 | 1.00E-91 | 283/328(86%) | NM_020829.4 |
KCNQ1OT1, lncRNA | 91671 | 8.00E-04 | 34/36(94%) | NR_002728.3 | |
TCONS_00056533 (chr11:35464132–35547341) | PRRC2C, mRNA | 10381 | 0 | 1056/1233(86%) | NM_015172.4 |
RPL7A, mRNA | 887 | 1.00E-124 | 366/425(86%) | NM_000972.3 | |
SH3BGR, mRNA | 1109 | 6.00E-38 | 134/154(87%) | NM_007341.3 | |
LCA5L, mRNA | 2808 | 8.00E-22 | 98/116(84%) | NM_001384288.1 | |
GET1-SH3BGR, lncRNA | 2131 | 8.00E-22 | 76/83(92%) | NR_146618.2 | |
TCONS_00056535 (chr11:35464132–35547666) | PRRC2C, mRNA | 10381 | 0 | 1056/1233(86%) | NM_015172.4 |
RPL7A, mRNA | 887 | 1.00E-124 | 366/425(86%) | NM_000972.3 | |
PLPPR1, mRNA | 2322 | 3.00E-80 | 324/397(82%) | NM_017753.3 | |
SH3BGR, mRNA | 1109 | 6.00E-38 | 134/154(87%) | NM_007341.3 | |
LCA5L, mRNA | 2808 | 8.00E-22 | 98/116(84%) | NM_001384288.1 | |
GET1-SH3BGR, lncRNA | 2131 | 8.00E-22 | 76/83(92%) | NR_146618.2 | |
TCONS_00081686 (chr14:94322933–94598443) | RAB1A, mRNA | 2448 | 0 | 977/1059(92%) | NM_004161.5 |
RPS27, mRNA | 352 | 2.00E-117 | 284/308(92%) | NM_001030.6 | |
CEP68, lncRNA | 5706 | 1.00E-54 | 440/582(76%) | NR_134966.2 | |
SLC1A4, mRNA | 3699 | 7.00E-37 | 120/135(89%) | NM_001193493.2 | |
PCDHA4, mRNA | 10526 | 1.00E-14 | 85/102(83%) | NM_031500.3 | |
ACTR2, mRNA | 3783 | 2.00E-13 | 65/73(89%) | NM_005722.4 | |
TRAPPC3L, mRNA | 2681 | 9.00E-06 | 36/37(97%) | NM_001139444.3 | |
TCONS_00085032 (chr14:46517684–46654100) | TRA2B, mRNA | 4178 | 0 | 1766/2054(86%) | NM_004593.3 |
LOC107984784, lncRNA | 2353 | 6.00E-05 | 34/35(97%) | NR_148210.1 | |
TCONS_00085038 (chr14:46517684–46654102) | TRA2B, mRNA | 4178 | 0 | 1766/2054(86%) | NM_004593.3 |
LOC107984784, lncRNA | 2353 | 6.00E-05 | 34/35(97%) | NR_148210.1 | |
TCONS_00085039 (chr14:46517684–46654104) | TRA2B, mRNA | 4178 | 0 | 1766/2054(86%) | NM_004593.3 |
LOC107984784, lncRNA | 2353 | 6.00E-05 | 34/35(97%) | NR_148210.1 | |
TCONS_00085041 (chr14:46517684–46654115) | TRA2B, mRNA | 4178 | 0 | 1766/2054(86%) | NM_004593.3 |
LOC107984784, lncRNA | 2353 | 6.00E-05 | 34/35(97%) | NR_148210.1 | |
TCONS_00085073 (chr14:46633754–46683418) | DTHD1, lncRNA | 6722 | 7.00E-40 | 311/415(75%) | NR_165630.1 |
ABO, mRNA | 6478 | 3.00E-04 | 34/36(94%) | NM_020469.3 | |
TCONS_00091647 (chr15:58871309–59029119) | TMEM167A, mRNA | 4528 | 2.00E-40 | 150/177(85%) | NM_174909.5 |
CREB1, lncRNA | 8383 | 1.00E-06 | 37/38(97%) | NR_163947.1 | |
TCONS_00119210 (chr18:41220183–41493083) | CC2D2B, mRNA | 4448 | 6.00E-08 | 54/62(87%) | XM_024448000.1 |
TCONS_00134341 (chr2:16174493–16209879) | CC2D2B, mRNA | 4448 | 9.00E-08 | 44/48(92%) | XM_024448000.1 |
TCONS_00157962 (chr20:20528512–20536890) | None |  |  |  |  |
TCONS_00175309 (chr3:14952246–14984980) | PRRC2C, mRNA | 10381 | 0 | 1058/1234(86%) | NM_015172.4 |
ABL1, mRNA | 6719 | 0 | 1104/1450(76%) | NM_007313.3 | |
EXOSC2, mRNA | 2012 | 1.00E-25 | 84/92(91%) | NM_014285.7 | |
RPS6, mRNA | 1369 | 2.00E-09 | 41/42(98%) | NM_001010.3 | |
TCONS_00190051 (chr4:128216095–128464064) | SUCLG2, mRNA | 2350 | 2.00E-37 | 97/100(97%) | NM_003848.4 |
SVIP, mRNA | 4479 | 1.00E-04 | 38/41(93%) | NM_148893.3 | |
TCONS_00231851 (chr6:103313564–103332197) | RBM25, mRNA | 6813 | 0 | 661/797(83%) | NM_021239.3 |
TCONS_00240122 (chr7:118711689–118943142) | TAFA5, mRNA | 2604 | 7.00E-126 | 600/761(79%) | NM_015381.7 |
LOC101927575, lncRNA | 2031 | 5.00E-13 | 68/78(87%) | NR_110995.1 | |
TCONS_00248996 (chr7:121930621–122136469) | APH1A, mRNA | 2068 | 0 | 1496/1795(83%) | NM_016022.4 |
TCONS_00255085 (chr8:73194741–73441446) | RFX7, mRNA | 11022 | 0 | 3594/4004(90%) | NM_001370561.1 |
RPL21, mRNA | 566 | 1.00E-152 | 450/524(86%) | NM_000982.4 | |
NEDD4, mRNA | 7240 | 3.00E-80 | 376/478(79%) | NM_001284338.2 | |
ZNF26, mRNA | 17601 | 8.00E-06 | 39/41(95%) | NM_001256280.2 | |
TCONS_00277162 (chr9:94425250–94525143) | CHCHD2, mRNA | 797 | 1.00E-129 | 420/499(84%) | NM_016139.4 |
LINC00368, lncRNA | 3455 | 4.00E-05 | 34/35(97%) | NR_120415.1 | |
FBXL2, lncRNA | 1943 | 6.00E-04 | 30/30(100%) | NR_146129.2 | |
TCONS_00283667 (chrX:74316113–74347926) | None |  |  |  |  |
TCONS_00292116 (chrY:1517943–1538160) | None |  |  |  |  |