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Table 1 Pathogens detected by the high-throughput respiratory PCR panels

From: An economic evaluation of two PCR-based respiratory panel assays for patients admitted to hospital with community-acquired pneumonia (CAP) in the UK, France and Spain

Target pathogens

Micro-organism type

Respiratory 1 Panel (upper respiratory pathogens)

 Influenza B

Virus

 Influenza A

Virus

Mycoplasma pneumoniae

Bacteria

 SARS-CoV-2 (two targets)a

Virus

 Coronavirus group (229E, NKU1, NL63, OC43)a

Virus

 Bocavirus

Virus

 Rhinovirus

Virus

 Metapneumovirus

Virus

 HPIV group (HPIV 1, 2, 3 and 4)a

Virus

 Adenovirus

Virus

 Respiratory Syncytial Virus

Virus

Respiratory 3 Panel (lower respiratory pathogens)

Staphylococcus aureus

Bacteria

Bordetella pertussis

Bacteria

Moraxella catarrhalis

Bacteria

Legionella pneumophila

Bacteria

Coxiella burnetii

Bacteria

Pneumocystis jirovecii

Fungi

Streptococcus pneumoniae

Bacteria

Haemophilus influenzae

Bacteria

Mycoplasma pneumoniae

Bacteria

  1. Abbreviations: HPIV Human parainfluenza viruses, PCR Polymerase chain reaction, SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2
  2. aThe panel can detect the different types but the result does not specify which type is detected