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Association of genetic variants of oxidative stress responsive kinase 1 (OXSR1) with asthma exacerbations in non-smoking asthmatics

BMC Pulmonary Medicine volume 22, Article number: 3 (2022) Cite this article

Abstract

Background

Asthma exacerbation threatens patient's life. Several genetic studies have been conducted to determine the risk factors for asthma exacerbation, but this information is still lacking. We aimed to determine whether genetic variants of Oxidative Stress Responsive Kinase 1 (OXSR1), a gene with functions of salt transport, immune response, and oxidative stress, are associated with exacerbation of asthma.

Methods

Clinical data were obtained from 1454 asthmatics and single nucleotide polymorphisms (SNPs) of OXSR1 were genotyped. Genetic associations with annual exacerbation rate were analyzed depending on smoking status.

Results

Eleven SNPs were selected using Asian data in the International HapMap database. The common allele of rs1384006 C > T of OXSR1 showed a significantly higher annual exacerbation rate than the rare allele in non-smoking asthmatics (CC vs. CT vs. TT: 0.43 ± 0.04 vs. 0.28 ± 0.03 vs. 0.31 ± 0.09, P = 0.004, Pcorr = 0.039). The frequent exacerbators had a significantly higher frequency of the common allele of rs1384006 C > T than did the infrequent exacerbators (74.4% vs. 55.2%, P = 0.004, Pcorr = 0.038).

Conclusion

The common allele of rs1384006 C > T of OXSR1 was associated with the asthma exacerbation rate and a higher risk of being a frequent exacerbator, indicating that non-smoking asthmatics who carry common alleles may be vulnerable to asthma exacerbations.

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Introduction

Asthma is a heterogeneous disease of chronic airway obstruction with a wide variety of symptoms, which develops in response to genetic and environmental influences [1, 2]. Recent cluster analyses have demonstrated an exacerbation-prone phenotype in a certain number of asthmatics [3, 4]. Because asthma exacerbation is a potentially life-threatening condition, risk factors for exacerbation-prone asthma have been under intense research to assist in early diagnosis and the development of new treatment strategies. During the past decade, hypothesis-driven and hypothesis-free approaches about genetic factors and gene-environment interactions have been applied and many possibly associated genetic variants have been identified, including several single nucleotide polymorphisms (SNPs) [1, 2]. For example, a mutant allele of rs1800925 on IL13 was associated with emergency room (ER) visits or hospitalizations of Costa Rican children with asthma [5], and those of rs1805011 and rs1801275 on IL4RA were associated with intensive care unit (ICU) care, ER visits or hospitalizations in two cohorts of US adult asthma patients [6]. The mutant allele of rs4950928 on CHI3L1 was also associated with asthma-related hospital admissions in adult and pediatric asthmatics [7]. The SNP rs7216389 of ORMDL3 was associated with exacerbation of asthma of children between the ages of 1–6 years [8]. Variants of CD14 SNP rs2915863 and LY96 SNP rs17226566 were also related to the risk of acute severe exacerbations induced by environmental endotoxin exposure [9]. However, additional genetic factors associated with asthma exacerbation should be elucidated for in-depth understanding of the genetic pathogenesis and the improvement of diagnostic accuracy.

Patients with severe asthma, including exacerbation-prone asthma, have current unmet needs in terms of a lack of effective treatments, such as corticosteroids [10]. Corticosteroid insensitivity is a clinical feature of severe asthma and COPD, as characterized by the reduced effect of dexamethasone in inhibiting the release of proinflammatory cytokines from monocytes and macrophages [11]. Activation of p38 mitogen activated protein kinase (MAPK) may alter corticosteroid responsiveness in response to oxidative stress and enhanced oxidative stress is one of the main triggers inducing chronic airway inflammation [12]. Excessive generation of reactive oxygen species (ROS) has been shown to activate multiple protein kinases, such as extracellular signal-regulated kinase (ERK)1/2, protein kinase B (PKB), and protein tyrosine kinases (PTKs) [13, 14]. Oxidants-induced mucin production from epithelial cells was accompanied by p38 MAPK activation resulting from a decrease in function of the tyrosine phosphatase Src homology region 2 domain-containing phosphatase-1 (SHP-1) [15].

One of the important clinical manifestations of exacerbation is an increase in the production of and alterations of the nature of mucus. A recent quantitative pathology analysis of fatal asthmatics found that more than 98% of their airways were occluded to some extent by mucus [16]. In addition, acute exacerbation with airway obstruction is usually caused by a mucus plug in the large and medium-sized bronchi, and even in the small airways [17]. The nature of mucus is regulated by the dilution of bronchial epithelial lining fluids. The transport of anions such as Cl– and HCO3– in the airway epithelium is recognized as one of the most important factors to regulate airway surface hydration and mucociliary clearance [18]. ROS induces lipid peroxidation of cell membranes and the oxidation of amino acids to inactivate membrane-bound receptors [19, 20]. This damage may modify the functions of membrane molecules, such as cystic fibrosis transmembrane conductance regulator (CFTR) and solute carrier family 26 member 4 (Slc26a4) [21].

The WNK-SPAK/OXSR1 kinase complex is composed of the kinases WNK (with no lysine) and SPAK (SPS1-related proline/alanine-rich kinase) or the SPAK homolog OXSR1 (oxidative stress–responsive kinase 1). The WNK family senses changes in intracellular Cl− concentration, extracellular osmolarity, and cell volume and transduces this information to Na+, K+, and Cl− cotransporters (collectively referred to as CCCs [cation-chloride cotransporters)] and ion channels to maintain cellular and organismal homeostasis. WNK1 phosphorylates and activates two related kinases, OXSR1 and STK39, which in turn phosphorylate and activate the Na+-K+-Cl− co-transporters: SLC12A2 (NKCC1) and SLC12A1, SLC26A3, SLC26A6, SLC26A9 [22], CFTR [23], and the Cl− and/or HCO3− transporters NBCe1-B [24, 25].

OXSR1 is ubiquitously expressed in most tissues, with high levels in the lung, especially the bronchial epithelium (https://www.proteinatlas.org/). In addition, OXSR1 is also thought to play an important role in regulation of immune response and oxidative stress [26, 27]. These data prompted us to study the association of genetic variants of OXSR1 with the risk of asthma exacerbation.

Materials and methods

Study subjects

The study subjects were Korean asthma patients who met the following diagnostic criteria: physician-diagnosed asthma with airway reversibility (more than 12% and 200 mL increase in forced expiratory volume in one second (FEV1), more than 20% change in peak expiratory flow rate), 20% or more of FEV1 improvement after asthma treatment for 2 weeks, or provocative concentration 20 (PC20) < 10 mg/mL on methacholine bronchial provocation test. They were followed up to for longer than 1 year after enrollment at 3 tertiary hospitals.

DNA from 1454 asthmatic patients who met these conditions were obtained from the biobank of Soonchunhyang University Bucheon Hospital, Korea and written informed consent was obtained at the time of DNA collection. The number of exacerbations was measured for the initial 1 year after enrollment, and asthma exacerbation was defined as the definition used by the American Thoracic Society/European Respiratory Society, which includes both severe and moderate exacerbation [28]. Severe exacerbation was defined as a condition that needs the addition of systemic corticosteroids (> 0.5 mg of prednisolone/kg of body weight for more than 3 days) and consideration of a hospitalization or emergency room (ER) visit, and moderate exacerbation was defined as an exacerbation that is improved by increasing other asthma medications, such as inhaled corticosteroids (ICS), or by adding a rescue bronchodilator without using systemic corticosteroids [28]. Pulmonary function was measured at baseline and then every three months, and the ICS and systemic corticosteroids used were expressed as fluticasone equivalent dose (mcg/day) and prednisone equivalent dose (mg/year) as previously described [29]. The protocol was approved by the Ethics Committee of Soonchunhyang Bucheon Hospital (SCHBC_2014_07_028).

Selection of single nucleotide polymorphisms and genotyping

Single nucleotide polymorphisms (SNPs) in OXSR1 were selected using the Asian population database from the International HapMap Project (http://hapmap.ncbi.nlm.nih.gov/) and NCBI (http://www.ncbi.nlm.nih.gov/snp) databases as follows: first, candidate SNPs were extracted from the intragenic region including 2 kb of the 5’ region of the gene using Asian population data in the International HapMap database, and then linkage disequilibrium structures of each gene were analyzed using SNPs with > 5% minor allele frequencies (MAF). A representative SNP was selected in the case of absolute LD (|D′| = 1 and r2 > 0.95) between the SNPs. Finally, 11 SNPs were selected and genotyped using the GoldenGate assay with VeraCode microbeads (Illumina, San Diego, CA, USA) as previously described [30]. These were scanned using the BeadXpress® system (Illumina).

Statistics

Fisher’s exact test was used to compare the observed number of each genotype with those expected for a population in Hardy–Weinberg equilibrium (HWE). Haplotypes of each individual were inferred using the PHASE algorithm (ver. 2.1) [31]. A type III univariate general linear model was applied to the continuous variables (number of exacerbations) and multiple logistic regression to the discrete variables (presence of frequent exacerbation). In the logistic regression analysis, the odds ratios (ORs) and 95% confidence interval were calculated for each genotype and haplotype. The data were analyzed using SAS ver. 9.1 (SAS, Cary, NC, USA) and SPSS ver. 12.0 (SPSS, Chicago, IL, USA). To correct the P-values for multiple comparisons, the effective number of independent SNPs (Meff) of OXSR1 was calculated using SNP spectral decomposition (http://genepi.qimr.edu.au/general/daleN/SNPSpD) [32]. The calculated Meff value for the 11 SNPs of OXSR1 was 10.035. Corrected P (Pcorr) values < 0.05 were considered significant. Statistical power of the genetic association was calculated using the Genetic Association Study (GAS) Power Calculator (http://csg.sph.umich.edu/abecasis/cats/gas_power_calculator/) based on CaTS power calculator [33].

Results

Clinical characteristics of the study subjects

A total of 1,454 asthma patients were enrolled (Table 1). Their clinical characteristics were compared depending on their exacerbation frequency: frequent exacerbators (FE) were defined as subjects experiencing exacerbations 2 or more times in the first year of follow-up.

Table 1 Clinical characteristics of the study subjects
Full size table

When compared with non-frequent exacerbators (non-FE), the FE had an older age (51.2 ± 1.2 vs. 46.3 ± 0.4 years, P = 1.05E−04), higher smoking amount (8.5 ± 1.5 vs. 5.9 ± 0.4 pack year, P = 0.041), and lower rate of atopy (39.7 vs. 48.8%, P = 0.05). Durations of asthma and follow-up were longer in the FE (6.0 ± 0.9 vs. 3.1 ± 0.2 years, P = 0.003, 7.3 ± 0. vs. 6.2 ± 0.1 years, respectively, P = 0.007).

In the FE group, forced vital capacity (FVC), FEV1, and FEV1/FVC were all significantly lower (67.7 ± 1.4vs. 83.0 ± 0.5% predicted, P = 1.45E−20, 58.4 ± 1.6vs. 82.6 ± 0.6% predicted, P = 3.06E−30, 64.8 ± 1.2vs. 75.6 ± 0.3%, respectively, P = 6.96E−20), and the PC20 of the methacholine challenge test was also lower (5.5 ± 0.8 mg/mL vs. 7.6 ± 0.3 mg/mL, P = 0.037) than those of the non-FE.

Doses of ICS and systemic corticosteroids used for the first year were higher in the FE (571.3 ± 43.8 vs. 211.4 ± 7.3 μg/day of fluticasone equivalents, P = 3.16E−13, 564.1 ± 95.4 mg/year vs. 80.3 ± 9.6 mg/year of prednisolone equivalents, P = 1.51E−06). Asthma medications except glucocorticosteroids of the study subjects were presented in Additional file 1: Table S1. Age, sex, serum total IgE level, predicted FEV1% at the first visit, and total ICS and systemic steroid dose in the 1st year of visit were considered covariates in the analyses of genetic associations.

Frequencies, heterozygosity, and Hardy–Weinberg equilibrium (HWE) of SNPs of OXSR1

Genotype frequencies of the 11 SNPs are demonstrated in Additional file 1: Table S2 and their HWEs were > 0.05. Two haplotype blocks were generated on the basis of LD among the 11 SNPs (Fig. 1A). HapBlock 1 included four haplotypes (frequency > 0.05), and HapBlock 2 included six haplotypes (Fig. 1B). Haplotypes (ht) 3, and ht4 in block 1 and ht1, ht3, ht4, ht5, and ht6 in block 2 were excluded from further statistical analysis because of their equivalences to rs1392283, rs61005484, rs74919163, rs2011, rs2298417, rs156260 and rs9880223, respectively.

Fig. 1
figure 1

Map, SNP location and linkage disequilibrium (A) and haplotypes of each HapBlock (B) of the eleven SNPs in OXSR1 gene

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Association of SNPs and haplotypes on OXSR1 with annual number of exacerbations during the first year

In the total study subjects, patients with the common allele of rs1392283 A > G showed a significantly higher annual number of exacerbations (0.43 ± 0.03 vs. 0.32 ± 0.04 vs. 0.14 ± 0.08 in dominant models, P = 0.043, Additional file 1: Table S3). Conversely, patients with minor alleles of rs2298417 C > T showed a higher annual number of exacerbations (0.38 ± 0.02 vs. 0.47 ± 0.05 vs. 0.5 ± 0.12 in dominant models, P = 0.020, Additional file 1: Table S3). However, these differences disappeared after correction for multiple comparisons.

In non-smokers, we performed analyses on each group of never-smokers (NS = 955) and current and ex-smokers (n = 499), because smoking itself is a confounding variable affecting asthma exacerbations [34]. Clinical parameters of the two groups are presented in Additional file 1: Table S4. In the analysis using the univariate general linear model, rs9839010, rs1392283, rs74919163, rs1384006, rs2011, ht1c, ht4c, and ht2 in block1 showed differences (P < 0.05) in the annual number of exacerbations depending on the genotypes in the non-smoker group (Table 2). Even after correction for multiple comparisons, patients with the common allele of rs1384006 C > T persistently showed higher annual exacerbation numbers (0.43 ± 0.04 vs. 0.28 ± 0.03 vs. 0.31 ± 0.09 in the dominant mode, Pcorr = 0.039, Table 2). In the smoker group, there was no significant association between SNP variants and number of asthma exacerbations (Additional file 1: Table S5).

Table 2 Association of SNPs and haplotypes of OXSR1 with the number of exacerbations during the 1st year of follow up in non-smoker subjects
Full size table

Association of SNPs and haplotypes of OXSR1 with risk of frequent exacerbation

SNPs associated with the risk of frequent exacerbations were analyzed by logistic regression (Additional file 1: Table S6). In the non-smoker group, the common allele homozygotes of rs1384006 C > T had significantly increased numbers of frequent exacerbators (CC vs. CR vs. RR: 74.3% vs. 20.3% vs. 5.4%, P = 0.004, OR: 0.36 [0.18–0.72], Fig. 2 and Table 3). This risk was significant even after correction for multiple comparisons (Pcorr: 0.038, Table 3). However, this SNP was not associated with the risk of frequent exacerbator in smokers (OR:0.93 [0.48–1.79], P = 0.825). In the analysis of all patients, common allele variants of rs1392283, rs1384006, and rs2011 were found to be associated with an increased risk of frequent exacerbators. However, these differences lost their significance after correction for multiple comparisons (Additional file 1: Table S6).

Fig. 2
figure 2

Comparison of annual number of exacerbations according to the genotypes of rs1384006 on OXSR1

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Table 3 Risk of a frequent exacerbator with the SNPs and haplotypes of OXSR1 in the non-smoker group
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Discussion

In this study, we were the first to demonstrate that the common allele homozygotes of rs1384006 C > T of the OXSR1 gene were significantly associated with a higher exacerbation rate and the risk of FE in the nonsmoking asthmatics. OXSR1 has rarely been studied with regard to respiratory diseases, although it plays a role as a salt transportation, and cell volume control through ionic mechanisms [35, 36] and ion transport by bronchial epithelial cells is essential for healthy airways. Imbalance of the transport system is closely related to the pathophysiology of asthma such as dysfunction of epithelial cells and smooth muscles [37, 38].

To the best of our knowledge, this is the first study to suggest that OXSR1 may play a role in asthma exacerbation under interaction with smoking conditions. According to Reducing Associations by Linking Genes And omics Results (REALGAR, https://realgar.org/) database [39, 40], a tissue-specific, disease-focused resource for integrating omics results, the expression of the OXSR1 gene in various cells was not only affected by smoking, but also by treatment of glucocorticoid (Additional file 2: Fig. S1). In cell-based transcriptome studies, the expression of OXSR1 was significantly increased in the bronchial epithelial cell by cigarette and e-cig smoking (effect size-based meta-FDR q value = 4.54 × 10–8, Additional file 2: Fig. S1A), as well as in airway smooth muscle and BEAS-2B cells by dexamethasone and budesonide treatment (meta-FDR q value = 0.032, Additional file 2: Fig. S1B). However, there was no significant association with the risk of mild to moderate asthma, severe asthma, and fetal asthma (meta-FDR q = 0.371, Additional file 2: Fig. S2). These transcriptome-based search results indicate that the OXSR1 gene is associated with smoking and glucocorticoid treatment responses, which may affect asthma exacerbation, and can provide biological bases for our observations, where the genetic association of OXSR1 with asthma exacerbation was limited to non-smokers.

Epithelial cells serve to protect airways from inhaled toxic substances and microorganisms. Airway secretory cells secrete mucin as the core glycoproteins of mucus, and cilia on the top of ciliated cells export mucus outside the lung to protect the lung from particles and pathogens [41]. This mucociliary clearance is an important innate defense mechanism that cleans up inhaled allergens and other harmful stimuli [42]. The mucus gel is placed on a fluid layer called an airway-surface liquid (ASL), and the efficacy of mucociliary clearance depends on the ion transport pathways to maintain the depth of ASL [37, 41].

Previous studies found that asthma is associated with reduced mucociliary clearance, especially during exacerbation [38, 42]. In β-epithelial Na+ channel (Scnnlb) transgenic mice, mucociliary clearance is reduced due to dehydration and thickened mucus [43]. In addition, the Scnnlb transgenic juvenile mice exhibit type 2 airway inflammation such as IL-13, airway eosinophilia, and alternative macrophage activation with reduced mucociliary clearance [44, 45]. In chronic lung diseases including asthma, epithelial Na+ channel blockers, amiloride, or hypertonic saline can restore mucociliary clearance by improving hydration of the airway surfaces. These facts support that there is a close association between the Na+ channel, mucociliary clearance, and asthma [46, 47]. Therefore, the OXSR1 gene, which plays a role in regulating salt, water and cell volume by an ionic mechanism, is likely to play an important role in the mucus concentration, ASL fluid layer, and mucociliary clearance, suggesting that genetic variants of OXSR1 are presumed to be related to frequent exacerbation of asthma through these mechanism.

Recently, oxidative stress and its pathways have been thought to contribute significantly to severe asthma and asthma exacerbations [48, 49]. However, the relationship between OXSR1, a gene related to oxidative stress, and asthma exacerbation has never been studied. OXSR1 is also involved in the regulation of immune responses by interacting with TNF receptor protein kinase C-θ (PKCθ), which is expressed by lymphoid tissues [26, 36]. OXSR1 and WNK1 kinase, an upstream activator of OXSR1, are hardly detectable at basal activity, which may mean that WNK-OXSR1 signaling is regulated tightly in normal physiological conditions [36].

Interestingly, this genetic effect of rs1384006 C > T was not found in the smoker asthmatics. This indicates that there was an interaction effect between rs1384006 and smoking status, which was confirmed by including the SNP × smoking interaction term when analyzing genetic association for total subjects. The interaction terms were statistically significant in both general linear model (F = 5.42, P = 0.020 (in GLM) and logistic regression analysis (OR = 2.63 [95% CI 1.02–6.83], P = 0.046). The reason for this finding could be explained by smoking itself being a strong inducer to exacerbate asthma [34]. Cigarette smoking is associated with accelerated decline of lung function in asthmatics [50], resulting in worsening of asthma severity [51], reduction of responsiveness to glucocorticoids [52], poor asthma control, and a higher hospital admissions [53].

The most important mechanism that may explain the relative corticosteroid resistance in smokers with asthma and COPD is a reduction in the expression of the enzyme histone deacetylase 2 (HDAC2). A reduction in HDAC activity and HDAC2 expression may account for the amplified inflammation and resistance to the actions of corticosteroids. The p38 mitogen-activated protein kinase (MAPK) pathway is also thought to play a role in corticosteroid insensitivity [54]. Thus, rs1384006 C > T of OXSR1 might not exert any genetic effect in the enhanced MAPK- and reduced HDAC-induced airway inflammation in smokers.

There are some limitations to this study. First, the authors included current smokers as study subjects, which may raise the question of whether smoking asthma patients are truly pure asthmatics. However, 25% of asthma patients are still current smokers in the real world and smoking and asthma are very closely related and affect each other [55]. Pathophysiologically, smoking affects inflammatory condition of asthma patients, which also affects the responsiveness of treatments such as glucocorticoid [55, 56]. Therefore, smoking in asthma has long been recognized as an important factor that must be considered in reality. Second, there is still little information about the function of the OXSR1 gene in asthma. According to functional estimation of the SNPs linked with rs1384006 in Asian populations (SNPinfo Web Server, https://snpinfo.niehs.nih.gov/), rs1384006 did not affect transcription factor binding, splicing sites, splicing regulation, or miRNA molecular functions. We also estimated the functional role of rs1384006 using QTLbase (http://mulinlab.org/qtlbase). The search showed that rs1384006 was associated with the mRNA expression of OXSR1 in blood CD14 + monocyte, CD4 + native T cell, and neutrophil (FDR q < 0.01); C allele of rs1384006 seemed to be associated with higher expression of OXSR1 compared with T allele (beta value; 0.17–0.32 for C vs -0.03 for T allele). Rs1384006 also showed significant association with the expression levels of XYLB and ACVR2B, genes located downstream of OXSR1, in blood CD4 + naïve T cells (FDR q = 1.87 × 10–7, beta = 0.17–0.30). Additionally, rs1384006 was likely to be associated with methylation of cg00930230 on XYLB gene (97.7 Kb downstream from rs1384006) of blood neutrophils (P = 0.00065, beta = -0.438) and of cg10548708 at 31 kb upstream of OXSR1 gene (85.6 kb upstream of rs1384006) in monocytes (p = 0.00023, beta value = -0.379). These QTL data suggest that the C allele rs1384006 could be associated with high OXSR1 expression via epigenomic changes of the region around OXSR1, which should be evaluated in an additional functional study. Since little is known about it, it is worthy as an original discovery to be the subject of future genetic studies about asthma exacerbations. Third, we could not confirm the causal relationship between the common allele variant of rs1384006 in the OXSR1 gene and asthma exacerbations in this study because we had no replication data using other independent cohort subjects. The statistical power of our main finding on rs1384006 at a given sample size was 0.995 and it is not clear what the appropriate sample size is when studying gene-environmental interactions in terms of asthma exacerbation, but further studies on larger samples are needed to achieve more reliable results. When searching several publicly available GWASs for asthma alternatively, rs1384006 was associated with hospital admissions due to asthma (P = 0.043), as well as asthma-related anxiety (P = 0.002), bacterial pneumonia (P = 0.010), and the risk of asthma (P = 0.044) in FinnGen data (Additional file 1: Table S7), although no associations with asthma-related phenotypes was observed in other data sets (Michigan Genomics Initiative, UKBioBank, NHGRI-EBI, and GABRIEL Consortium). This discrepancy may be possibly due to ethnic difference and particularly the lack of consideration for smoking behavior in these public data. Fourth, because normal subjects were not included in the study, we cannot compare the SNP frequency with those of non-asthmatic controls. Therefore, further functional experiments are needed to identify its pathophysiology in asthma compared to normal controls.

Conclusions

We have newly discovered that variants of the OXSR1 gene, which is involved in the regulation of salt and cell volume, immune response, and oxidative stress, may affect asthma exacerbation. This will provide an opportunity to highlight a new genetic mechanism related to asthma exacerbation.

Availability of data and materials

Genomic raw data was submitted as an Additional file 3.

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Acknowledgements

The biospecimens and data used for this study were provided by the Biobank of Soonchunhyang University Bucheon Hospital, a member of the Korea Biobank Network (KBN4_A06).

Funding

The study was supported by a research grant from Soonchunhyang University to Hun Soo Chang and by a grant from the National Research Foundation of Korea (NRF) funded by the Ministry of Education (NRF-2020R1F1A1076179).

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Author notes

  1. Min-Hye Kim and Hun Soo Chang contributed equally as the first author

Authors and Affiliations

  1. Department of Internal Medicine, College of Medicine, Ewha Womans University, Seoul, South Korea

    Min-Hye Kim, Ji-Su Shim & Young-Joo Cho

  2. Department of Anatomy and BK21 FOUR Project, College of Medicine, Soonchunhyang University, Cheonan, South Korea

    Hun Soo Chang

  3. Division of Allergy and Respiratory Medicine, Department of Internal Medicine, Soonchunhyang University Bucheon Hospital, 1174, Jung-Dong, Wonmi-Ku, Bucheon, Gyeonggi-Do, 420-020, South Korea

    Jong-Uk Lee, Jong-Sook Park & Choon-Sik Park

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Contributions

Conception and design: M-HK, HSC, J-SP, C-SP. Administrative support: HSC, J-UL, J-SP, Y-JC, C-SP. Provision of study materials or patients: M-HK, J-SS, J-SP, Y-JC, C-SP. Collection and assembly of data: M-HK, HSC, J-UL, J-SS, J-SP, Y-JC, C-SP. Data analysis and interpretation: M-HK, HSC, J-UL, J-SP, C-SP. Manuscript writing: All authors. All authors read and approved the final manuscript.

Corresponding author

Correspondence to Jong-Sook Park.

Ethics declarations

Ethics approval and consent to participate

The protocol was approved by the Ethics Committee of Soonchunhyang Bucheon Hospital (SCHBC_2014_07_028). DNA from 1,454 asthmatic patients who met inclusion criteria were obtained from the biobank of Soonchunhyang University Bucheon Hospital, Korea and written informed consent was obtained at the time of DNA collection and the study protocol was carried out in accordance with the Declaration of Helsinki.

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Not applicable.

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All listed authors declare that they have no relevant competing interests.

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Supplementary Information

Additional file 1.

Table S1.. Asthma medications except glucocorticosteroids of the study subjects. Table S2. Minor allele frequencies, heterozygosity, and Hardy-Weinberg equilibrium of OXSR1 gene polymorphisms. Table S3. Association of SNPs and haplotypes of OXSR1 with the number of exacerbations during the 1st year of follow up in the total subjects. Table S4. Clinical characteristics of the study subjects according to their smoking status. Table S5. Association of SNPs and haplotypes of OXSR1 with the number of exacerbations during the 1st year of follow-up in smoker subjects. Table S6. Risk of frequent exacerbators with the SNPs and haplotypes of OXSR1. Table S7. Publicly available GWASs for asthma phenotypes and rs1384006.

Additional file 2.

Supplementary Figure S1. The expression of the OXSR1 gene in various cells by smoking (A) and glucocorticoid (B) according to cell-based transcriptome studies in REALGAR database (https://realgar.org/). Supplementary Figure S2. The expression of the OXSR1 gene in various subtypes of asthma according to cell-based transcriptome studies in REALGAR database (https://realgar.org/).

Additional file 3.

Genomic raw data.

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Kim, MH., Chang, H.S., Lee, JU. et al. Association of genetic variants of oxidative stress responsive kinase 1 (OXSR1) with asthma exacerbations in non-smoking asthmatics. BMC Pulm Med 22, 3 (2022). https://doi.org/10.1186/s12890-021-01741-x

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Keywords

BMC Pulmonary Medicine

ISSN: 1471-2466

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